If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ), 'gf_id' => 'HOM05D000950', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000950' ), 'data_identifier' => 'HOM05D000950', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000950', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '632', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15830' => 'bna', 'A03p20210' => 'bna', 'A04p01290' => 'bna', 'A06p08990' => 'bna', 'A09p13430' => 'bna', 'A09p15700' => 'bna', 'A09p46060' => 'bna', 'Aa31LG10G15160' => 'aar', 'Aa31LG10G8210' => 'aar', 'Aa31LG1G2010' => 'aar', 'Aa31LG2G560' => 'aar', 'Aa31LG3G8490' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.23' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3602' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.277' => 'aag', 'Actinidia02039' => 'ach', 'Actinidia03107' => 'ach', 'Actinidia11319' => 'ach', 'Actinidia14525' => 'ach', 'Actinidia31808' => 'ach', 'Actinidia32891' => 'ach', 'Actinidia34084' => 'ach', 'Actinidia38294' => 'ach', 'Actinidia39867' => 'ach', 'Ah.05g176110' => 'amhyb', 'Ah.07g209020' => 'amhyb', 'AL1G24310' => 'aly', 'AL2G12450' => 'aly', 'AL4G32780' => 'aly', 'AL5G33810' => 'aly', 'AL5G43270' => 'aly', 'AL8G26490' => 'aly', 'Aqoxy2G01503_Aqoxy2G01505' => 'aox', 'Aqoxy7G00435' => 'aox', 'Aqoxy7G01503' => 'aox', 'arahy.Tifrunner.gnm1.ann1.385S8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X8G46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JW32C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH3WI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY8Y8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H37VQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICVP6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KEZ9JE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH2VJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0KDQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQ4SRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIWW3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB34C2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZXSK0N' => 'arhy', 'AT1G12710' => 'ath', 'AT1G63090' => 'ath', 'AT3G53000' => 'ath', 'AT3G61060' => 'ath', 'AT5G52120' => 'ath', 'ATR0661G290' => 'atr', 'ATR0757G168' => 'atr', 'ATR0820G207' => 'atr', 'Atru.chr1.513' => 'acertr', 'Atru.chr5.411' => 'acertr', 'Atru.chr8.1671' => 'acertr', 'Atru.chr9.1545' => 'acertr', 'AUR62010648' => 'cqu', 'AUR62016023' => 'cqu', 'AUR62017289' => 'cqu', 'AUR62022746' => 'cqu', 'AUR62037902' => 'cqu', 'AUR62040156' => 'cqu', 'BcaB01g00318' => 'bca', 'BcaB01g03823' => 'bca', 'BcaB01g04185' => 'bca', 'BcaB07g31381' => 'bca', 'BcaC01g05646' => 'bca', 'BcaC01g06165' => 'bca', 'BcaC02g10202' => 'bca', 'BcaC04g22468' => 'bca', 'BcaC04g22722' => 'bca', 'BcaC05g25119' => 'bca', 'BcaC05g25165' => 'bca', 'BcaC06g31934' => 'bca', 'BcaC07g39663' => 'bca', 'BolC3t14246H' => 'bol', 'BolC3t14764H' => 'bol', 'BolC4t24711H' => 'bol', 'BolC8t50440H' => 'bol', 'BolC9t54504H' => 'bol', 'BolC9t54798H' => 'bol', 'BraA03t10873Z' => 'bra', 'BraA03t11272Z' => 'bra', 'BraA04t15848Z' => 'bra', 'BraA06t24088Z' => 'bra', 'BraA09t36990Z' => 'bra', 'BraA09t37212Z' => 'bra', 'BraA09t40070Z' => 'bra', 'C03p18490' => 'bna', 'C03p23690' => 'bna', 'C04p31640' => 'bna', 'C05p10580' => 'bna', 'C08p28310' => 'bna', 'C09p15930' => 'bna', 'C09p18940' => 'bna', 'CAN.G1466.3' => 'can', 'CAN.G170.39' => 'can', 'CAN.G26.28' => 'can', 'CAN.G541.18' => 'can', 'CAN.G738.10' => 'can', 'CAN.G824.48' => 'can', 'CAN.G913.15' => 'can', 'CAN.G981.31' => 'can', 'CANSAT21G0846' => 'cansat', 'CANSAT21G1029' => 'cansat', 'CANSAT56G1488' => 'cansat', 'CANSAT80G1642' => 'cansat', 'CARHR013010' => 'chi', 'CARHR048420' => 'chi', 'CARHR130880' => 'chi', 'CARHR162890' => 'chi', 'CARHR171370' => 'chi', 'CARHR265050' => 'chi', 'Carub.0001s1242' => 'cru', 'Carub.0002s0189' => 'cru', 'Carub.0004s1842' => 'cru', 'Carub.0005s1950' => 'cru', 'Carub.0005s2771' => 'cru', 'Carub.0008s1220' => 'cru', 'Ca_06659_v3' => 'car', 'Ca_08953_v3' => 'car', 'Ca_10792_v3' => 'car', 'Ca_20248_v3' => 'car', 'Ca_23748_v3' => 'car', 'CBR_g20277' => 'cbr', 'CBR_g55001' => 'cbr', 'Cc02_g03350' => 'ccan', 'Cc02_g37320' => 'ccan', 'Cc06_g05000' => 'ccan', 'Cc06_g05010' => 'ccan', 'Cc08_g14040' => 'ccan', 'CDE02G1156' => 'cde', 'CDE04G1663' => 'cde', 'CDE04G2483' => 'cde', 'CDE06G2612' => 'cde', 'CDE11G1257' => 'cde', 'CDE12G0237' => 'cde', 'Cfa012108' => 'cfa', 'Cfa013232' => 'cfa', 'Ciclev10005557m.g' => 'ccl', 'Ciclev10012338m.g' => 'ccl', 'Ciclev10021409m.g' => 'ccl', 'Ciclev10021489m.g' => 'ccl', 'CiPaw.01G054600' => 'cil', 'CiPaw.02G025500' => 'cil', 'CiPaw.03G103000' => 'cil', 'CiPaw.04G067000' => 'cil', 'CiPaw.09G006900' => 'cil', 'CiPaw.10G003700' => 'cil', 'CiPaw.11G140800' => 'cil', 'CiPaw.12G097800' => 'cil', 'ClCG00G000890' => 'cla', 'ClCG00G003640' => 'cla', 'ClCG01G005600' => 'cla', 'ClCG05G001860' => 'cla', 'ClCG10G003740' => 'cla', 'ClCG10G019530' => 'cla', 'COL.COLO4_05266' => 'col', 'COL.COLO4_12617' => 'col', 'COL.COLO4_14269' => 'col', 'COL.COLO4_22285' => 'col', 'Cpa.g.sc18.222' => 'cpa', 'Cpa.g.sc5.105' => 'cpa', 'Cpa.g.sc74.82' => 'cpa', 'CsaV3_3G003730' => 'csa', 'CsaV3_3G009250' => 'csa', 'CsaV3_3G036670' => 'csa', 'CsaV3_5G005830' => 'csa', 'CSS0001096' => 'camsi', 'CSS0005584' => 'camsi', 'CSS0021044' => 'camsi', 'CSS0023055' => 'camsi', 'CSS0027978' => 'camsi', 'CSS0048934' => 'camsi', 'DCAR_000590' => 'dca', 'DCAR_004676' => 'dca', 'DCAR_006759' => 'dca', 'DCAR_018173' => 'dca', 'DCAR_020786' => 'dca', 'DCAR_025165' => 'dca', 'Dinv03167' => 'din', 'Dinv07344' => 'din', 'Dinv31537' => 'din', 'Dinv35183' => 'din', 'Dinv35853' => 'din', 'Dinv37379' => 'din', 'Dinv37689' => 'din', 'Dinv39006' => 'din', 'Dinv43763' => 'din', 'Duzib068G1420' => 'dzi', 'Duzib084G0147' => 'dzi', 'Duzib084G0423' => 'dzi', 'Duzib106G0678' => 'dzi', 'Duzib128G0023' => 'dzi', 'Duzib138G1404' => 'dzi', 'Duzib205G1006' => 'dzi', 'Duzib205G1118' => 'dzi', 'ECA233G0064' => 'eca', 'ECA233G1348' => 'eca', 'ECA234G0094' => 'eca', 'ECA236G0152' => 'eca', 'ECA238G1063' => 'eca', 'ECA240G0633' => 'eca', 'EL10Ac1g00986' => 'bvu', 'EL10Ac3g05704' => 'bvu', 'EL10Ac5g12732' => 'bvu', 'EL10Ac7g16760' => 'bvu', 'EL10Ac9g22459' => 'bvu', 'Eucgr.A01574' => 'egr', 'Eucgr.A02810' => 'egr', 'Eucgr.D02244' => 'egr', 'Eucgr.E00534' => 'egr', 'Eucgr.K00229' => 'egr', 'FAN01G0537' => 'fan', 'FAN01G1557' => 'fan', 'FAN01G1858' => 'fan', 'FAN02G3577' => 'fan', 'FAN03G0008' => 'fan', 'FAN03G1612' => 'fan', 'FAN03G2209' => 'fan', 'FAN04G0533' => 'fan', 'FAN05G0651' => 'fan', 'FAN05G4179' => 'fan', 'FAN06G1740' => 'fan', 'FAN06G1765' => 'fan', 'FAN06G3224' => 'fan', 'FAN06G4103' => 'fan', 'FAN08G1608' => 'fan', 'FAN09G4558' => 'fan', 'FAN10G3246' => 'fan', 'FAN10G3988' => 'fan', 'FAN13G0639' => 'fan', 'FAN14G3218' => 'fan', 'FAN18G3585' => 'fan', 'FvH4_5g01540' => 'fve', 'FvH4_6g17460' => 'fve', 'FvH4_7g13220' => 'fve', 'FvH4_7g29070' => 'fve', 'Glyma.03G017000' => 'gma', 'Glyma.03G189500' => 'gma', 'Glyma.05G049400' => 'gma', 'Glyma.07G077600' => 'gma', 'Glyma.09G145700' => 'gma', 'Glyma.10G064800' => 'gma', 'Glyma.10G238700' => 'gma', 'Glyma.13G149600' => 'gma', 'Glyma.16G197800' => 'gma', 'Glyma.17G131400' => 'gma', 'Glyma.20G155700' => 'gma', 'Gohir.A04G067000' => 'ghi', 'Gohir.A05G282400' => 'ghi', 'Gohir.A08G178900' => 'ghi', 'Gohir.A09G142600' => 'ghi', 'Gohir.A09G193100' => 'ghi', 'Gohir.A11G085400' => 'ghi', 'Gohir.A12G104000' => 'ghi', 'Gohir.A12G260200' => 'ghi', 'Gohir.D04G105600' => 'ghi', 'Gohir.D05G283600' => 'ghi', 'Gohir.D05G283901' => 'ghi', 'Gohir.D08G197500' => 'ghi', 'Gohir.D09G138800' => 'ghi', 'Gohir.D09G187300' => 'ghi', 'Gohir.D11G089600' => 'ghi', 'Gohir.D12G107400' => 'ghi', 'Gohir.D12G261000' => 'ghi', 'Gorai.004G208300' => 'gra', 'Gorai.006G159200' => 'gra', 'Gorai.006G210100' => 'gra', 'Gorai.007G095600' => 'gra', 'Gorai.008G117000' => 'gra', 'Gorai.008G279800' => 'gra', 'Gorai.009G298100' => 'gra', 'Gorai.009G409500' => 'gra', 'GSVIVG01010614001' => 'vvi', 'GSVIVG01019854001' => 'vvi', 'GSVIVG01027514001' => 'vvi', 'GSVIVG01033745001' => 'vvi', 'HanXRQChr03g0085621' => 'han', 'HanXRQChr04g0121841' => 'han', 'HanXRQChr06g0169561' => 'han', 'HanXRQChr06g0181601' => 'han', 'HanXRQChr07g0188501' => 'han', 'HanXRQChr07g0206861' => 'han', 'HanXRQChr10g0308181' => 'han', 'HanXRQChr13g0400081' => 'han', 'HanXRQChr13g0416731' => 'han', 'HanXRQChr14g0462101' => 'han', 'HanXRQChr16g0523591' => 'han', 'Haze_08943' => 'cav', 'Haze_13749' => 'cav', 'Haze_15217' => 'cav', 'Haze_19510' => 'cav', 'Hma1.2p1_0001F.1_g001840' => 'hma', 'Hma1.2p1_0084F.1_g043000' => 'hma', 'Hma1.2p1_0514F.1_g170060' => 'hma', 'HPP92_007367' => 'vpl', 'HPP92_007377' => 'vpl', 'HPP92_023105' => 'vpl', 'Hund04084' => 'sun', 'Hund11526' => 'sun', 'Hund11766' => 'sun', 'Hund14726' => 'sun', 'Hund16959' => 'sun', 'Hund27320' => 'sun', 'Lalb_Chr01g0018441' => 'lal', 'Lalb_Chr03g0034271' => 'lal', 'Lalb_Chr05g0225051' => 'lal', 'Lalb_Chr06g0161011' => 'lal', 'Lalb_Chr06g0161021' => 'lal', 'Lalb_Chr06g0172111' => 'lal', 'Lalb_Chr09g0321161' => 'lal', 'Lalb_Chr16g0377221' => 'lal', 'Lalb_Chr16g0389721' => 'lal', 'Lalb_Chr17g0340001' => 'lal', 'Lalb_Chr19g0131021' => 'lal', 'Lalb_Chr21g0315351' => 'lal', 'Lalb_Chr21g0316861' => 'lal', 'Lj1A993G72' => 'lonja', 'Lj1g0006375' => 'lja', 'Lj2A192T40' => 'lonja', 'Lj2g0021648' => 'lja', 'Lj2g0026458' => 'lja', 'Lj3C1007G10' => 'lonja', 'Lj3g0015577' => 'lja', 'Lj4g0027766' => 'lja', 'Lj8A238T61' => 'lonja', 'Lj9A577G58' => 'lonja', 'LjContig00238g0014831' => 'lja', 'Lsat_1_v5_gn_2_133060' => 'lsa', 'Lsat_1_v5_gn_2_23501' => 'lsa', 'Lsat_1_v5_gn_4_38100' => 'lsa', 'Lsat_1_v5_gn_6_26761' => 'lsa', 'Lsat_1_v5_gn_6_7160' => 'lsa', 'Lsat_1_v5_gn_6_87620' => 'lsa', 'Lsat_1_v5_gn_7_5801' => 'lsa', 'Lsat_1_v5_gn_8_7420' => 'lsa', 'Manes.01G066600' => 'mes', 'Manes.01G261700' => 'mes', 'Manes.02G027400' => 'mes', 'Manes.06G144300' => 'mes', 'Manes.08G018500' => 'mes', 'Manes.09G061300' => 'mes', 'Manes.14G028700' => 'mes', 'Mapoly0005s0262' => 'mpo', 'Mapoly0007s0161' => 'mpo', 'Mapoly0012s0152' => 'mpo', 'Mapoly0022s0146' => 'mpo', 'Mapoly0024s0070' => 'mpo', 'Mapoly0036s0061' => 'mpo', 'Mapoly0036s0062' => 'mpo', 'Mapoly0036s0064' => 'mpo', 'Mapoly0036s0066' => 'mpo', 'Mapoly0036s0068' => 'mpo', 'Mapoly0036s0069' => 'mpo', 'Mapoly0069s0033' => 'mpo', 'Mapoly0070s0092' => 'mpo', 'MBI04_g02072_MAGBIO' => 'mbi', 'MBI12_g29755_MAGBIO' => 'mbi', 'MBI17_g14572_MAGBIO' => 'mbi', 'MD01G1050800' => 'mdo', 'MD01G1050900' => 'mdo', 'MD01G1197200' => 'mdo', 'MD04G1066900' => 'mdo', 'MD04G1067200' => 'mdo', 'MD06G1073200' => 'mdo', 'MD12G1096700' => 'mdo', 'MD14G1094500' => 'mdo', 'Medtr0002s0020' => 'mtr', 'Medtr0113s0040' => 'mtr', 'Medtr1g101390' => 'mtr', 'Medtr4g102770' => 'mtr', 'Medtr5g010800' => 'mtr', 'Medtr7g103380' => 'mtr', 'MELO3C005373.2' => 'cme', 'MELO3C006145.2' => 'cme', 'MELO3C009421.2' => 'cme', 'MELO3C014055.2' => 'cme', 'Migut.B01699' => 'egut', 'Migut.E01293' => 'egut', 'Migut.F00370' => 'egut', 'Migut.L01741' => 'egut', 'Migut.N01418' => 'egut', 'Migut.O00842' => 'egut', 'MSTRG.12017' => 'ama', 'MSTRG.13820' => 'ama', 'MSTRG.1892' => 'ama', 'MSTRG.26660' => 'ama', 'MSTRG.27133' => 'ama', 'MSTRG.27134' => 'ama', 'MSTRG.28205' => 'ama', 'MSTRG.4875' => 'ama', 'Nitab4.5_0000132g0290' => 'nta', 'Nitab4.5_0000134g0170' => 'nta', 'Nitab4.5_0000134g0180' => 'nta', 'Nitab4.5_0000140g0190' => 'nta', 'Nitab4.5_0000258g0320' => 'nta', 'Nitab4.5_0000381g0370' => 'nta', 'Nitab4.5_0000680g0060' => 'nta', 'Nitab4.5_0001083g0130' => 'nta', 'Nitab4.5_0001559g0030' => 'nta', 'Nitab4.5_0001834g0010' => 'nta', 'Nitab4.5_0002080g0050' => 'nta', 'Nitab4.5_0002234g0090' => 'nta', 'Nitab4.5_0002718g0050' => 'nta', 'Nitab4.5_0002853g0100' => 'nta', 'Nitab4.5_0003865g0120' => 'nta', 'Nitab4.5_0004550g0110' => 'nta', 'Nitab4.5_0009127g0030' => 'nta', 'Nitab4.5_0009127g0040' => 'nta', 'Nitab4.5_0009405g0010' => 'nta', 'Nitab4.5_0012570g0010' => 'nta', 'Nn1g01372' => 'nnu', 'Nn2g13953' => 'nnu', 'Nn6g34236' => 'nnu', 'Nn6g35099' => 'nnu', 'Oeu004129.1' => 'oeu', 'Oeu030122.1' => 'oeu', 'Oeu030474.1' => 'oeu', 'Oeu038683.1' => 'oeu', 'Oeu039843.2' => 'oeu', 'Oeu048780.1' => 'oeu', 'Oeu059236.1' => 'oeu', 'Oeu062364.1' => 'oeu', 'Os02g0224900' => 'osa', 'Os02g0675800' => 'osa', 'Os03g0116700' => 'osa', 'Os04g0571300' => 'osa', 'Os09g0525300' => 'osa', 'Os10g0522400' => 'osa', 'Peaxi162Scf00021g00721' => 'pax', 'Peaxi162Scf00102g01432' => 'pax', 'Peaxi162Scf00110g01110' => 'pax', 'Peaxi162Scf00146g00517' => 'pax', 'Peaxi162Scf00233g00044' => 'pax', 'Peaxi162Scf00714g00617' => 'pax', 'Peaxi162Scf00716g00522' => 'pax', 'Peaxi162Scf00795g00018' => 'pax', 'Peaxi162Scf00915g00248' => 'pax', 'Peaxi162Scf01294g00231' => 'pax', 'PGR004G0020' => 'pgr', 'PGR031G0932' => 'pgr', 'PGR042G1520' => 'pgr', 'PGR042G3846' => 'pgr', 'PGR142G3582' => 'pgr', 'PGSC0003DMG400002691' => 'stu', 'PGSC0003DMG400004257' => 'stu', 'PGSC0003DMG400010258' => 'stu', 'PGSC0003DMG400011118' => 'stu', 'PGSC0003DMG400014315' => 'stu', 'PGSC0003DMG400022762' => 'stu', 'PGSC0003DMG400027777' => 'stu', 'PGSC0003DMG400028178' => 'stu', 'Phvul.001G185000' => 'pvu', 'Phvul.003G212300' => 'pvu', 'Phvul.004G121100' => 'pvu', 'Phvul.007G066700' => 'pvu', 'Phvul.007G224700' => 'pvu', 'Phvul.010G091000' => 'pvu', 'Potri.001G109800' => 'ptr', 'Potri.003G121900' => 'ptr', 'Potri.006G117600' => 'ptr', 'Potri.012G136200' => 'ptr', 'Potri.014G075800' => 'ptr', 'Potri.015G138600' => 'ptr', 'Pp3c16_11450' => 'ppa', 'Pp3c19_22630' => 'ppa', 'Pp3c24_14280' => 'ppa', 'Pp3c26_1510' => 'ppa', 'Prupe.2G156400' => 'ppe', 'Prupe.2G290600' => 'ppe', 'Prupe.5G091600' => 'ppe', 'Prupe.7G121000' => 'ppe', 'Psat1g102280' => 'psa', 'Psat2g181720' => 'psa', 'Psat3g037040' => 'psa', 'Psat4g067040' => 'psa', 'Psat4g151360' => 'psa', 'Psat6g198760' => 'psa', 'PSO339G5646' => 'pso', 'PSO384G3285' => 'pso', 'PSO478G5227' => 'pso', 'PSO782G3409' => 'pso', 'QL07p040967' => 'qlo', 'QL07p040970' => 'qlo', 'QL08p050478' => 'qlo', 'QL09p014909' => 'qlo', 'QL12p017327' => 'qlo', 'RcHm_v2.0_Chr1g0333681' => 'rch', 'RcHm_v2.0_Chr1g0352361' => 'rch', 'RcHm_v2.0_Chr1g0376791' => 'rch', 'RcHm_v2.0_Chr3g0471701' => 'rch', 'RcHm_v2.0_Chr7g0199151' => 'rch', 'Rhsim03G0083800' => 'rsi', 'Rhsim03G0084000' => 'rsi', 'Rhsim03G0177500' => 'rsi', 'Rhsim07G0020600' => 'rsi', 'Rhsim07G0094400' => 'rsi', 'Rhsim09G0196700' => 'rsi', 'Sabra01G0083100' => 'sbr', 'Sabra03G0086000' => 'sbr', 'Sabra06G0092500' => 'sbr', 'Sabra12G0102400' => 'sbr', 'Sabra14G0056100' => 'sbr', 'Sabra15G0149700' => 'sbr', 'SalBow1G8132' => 'sbo', 'SalBow4G0862' => 'sbo', 'SalBow5G0074' => 'sbo', 'SalBow5G4985' => 'sbo', 'SalBow6G1951' => 'sbo', 'Sc01g0008760' => 'sci', 'Sc11g0003070' => 'sci', 'Sc13g0008520' => 'sci', 'Sc20g0005930' => 'sci', 'Sc22g0000240' => 'sci', 'Sed0000184' => 'sed', 'Sed0003053' => 'sed', 'Sed0010865' => 'sed', 'Sed0021553' => 'sed', 'Sed0022052' => 'sed', 'Sed0027240' => 'sed', 'SEGI_07971' => 'sgi', 'SEGI_10961' => 'sgi', 'SEGI_11660' => 'sgi', 'SEGI_19602' => 'sgi', 'SEGI_34553' => 'sgi', 'SGA_v2.0_scaffold144G35974' => 'sas', 'SGA_v2.0_scaffold196G40880' => 'sas', 'SGA_v2.0_scaffold277G46724' => 'sas', 'SGA_v2.0_scaffold286G47090' => 'sas', 'SGA_v2.0_scaffold35G14112' => 'sas', 'SGA_v2.0_scaffold95G28866' => 'sas', 'SMO228G0028' => 'smo', 'SMO234G0084' => 'smo', 'SMO356G0745' => 'smo', 'Solyc01g091700.4' => 'sly', 'Solyc03g026160.4' => 'sly', 'Solyc08g080360.3' => 'sly', 'Solyc09g008820.3' => 'sly', 'Solyc10g017960.2' => 'sly', 'Solyc10g083730.2' => 'sly', 'Solyc10g085490.3' => 'sly', 'Solyc12g056410.2' => 'sly', 'Sopen01g037470' => 'spe', 'Sopen03g005040' => 'spe', 'Sopen08g028690' => 'spe', 'Sopen09g003610' => 'spe', 'Sopen10g006730' => 'spe', 'Sopen10g033200' => 'spe', 'Sopen10g034920' => 'spe', 'Sopen12g029000' => 'spe', 'Sp1g11290' => 'spa', 'Sp2g01500' => 'spa', 'Sp4g18880' => 'spa', 'Sp5g02300' => 'spa', 'Sp5g09320' => 'spa', 'SpUn0060_0060' => 'spa', 'TAR369G0089' => 'tar', 'TAR374G1190' => 'tar', 'TAR375G0645' => 'tar', 'TAR375G0978' => 'tar', 'TAR623G0447' => 'tar', 'TAR629G1586' => 'tar', 'TAR633G0100' => 'tar', 'TAR636G1682' => 'tar', 'THA.LOC104802012' => 'tha', 'THA.LOC104809420' => 'tha', 'THA.LOC104811992' => 'tha', 'THA.LOC104817271' => 'tha', 'THA.LOC104818197' => 'tha', 'THA.LOC104823575' => 'tha', 'THA.LOC104827492' => 'tha', 'Thecc.01G367500' => 'tca', 'Thecc.03G171200' => 'tca', 'Thecc.03G271900' => 'tca', 'Thecc.05G078400' => 'tca', 'Thhalv10006134m.g' => 'esa', 'Thhalv10008388m.g' => 'esa', 'Thhalv10010582m.g' => 'esa', 'Thhalv10014258m.g' => 'esa', 'Thhalv10023623m.g' => 'esa', 'TPR.G17413' => 'tpr', 'TPR.G17581' => 'tpr', 'TPR.G19218' => 'tpr', 'TPR.G25050' => 'tpr', 'TPR.G31504' => 'tpr', 'TPR.G40753' => 'tpr', 'TPR.G6663' => 'tpr', 'TWI14G0173' => 'twi', 'TWI15G0025' => 'twi', 'TWI39G0278' => 'twi', 'TWI53G2127' => 'twi', 'TWI60G1288' => 'twi', 'TWI74G1332' => 'twi', 'unitig_0.g1283' => 'ugi', 'unitig_22.g6716' => 'ugi', 'unitig_26.g9260' => 'ugi', 'unitig_26.g9694' => 'ugi', 'unitig_578.g16028' => 'ugi', 'unitig_749.g13405' => 'ugi', 'unitig_749.g14309' => 'ugi', 'unitig_899.g15211' => 'ugi', 'vmacro06717' => 'vma', 'vmacro07342' => 'vma', 'vmacro09854' => 'vma', 'vmacro13333' => 'vma', 'vmacro13921' => 'vma', 'VMungo0331G0801' => 'vmu', 'VMungo0464G1237' => 'vmu', 'VMungo0720G0915' => 'vmu', 'VMungo0720G1072' => 'vmu', 'VMungo0720G3069' => 'vmu', 'VMungo1215G2074' => 'vmu', 'VMungo1383G1479' => 'vmu', 'VMungo1383G2897' => 'vmu', 'Zm00001eb001120' => 'zma', 'Zm00001eb021380' => 'zma', 'Zm00001eb073610' => 'zma', 'Zm00001eb187160' => 'zma', 'Zm00001eb239060' => 'zma', 'Zm00001eb248010' => 'zma', 'Zm00001eb266640' => 'zma', 'Zm00001eb319000' => 'zma', 'Zm00001eb324910' => 'zma', 'Zm00001eb413460' => 'zma', 'Zm00001eb428650' => 'zma' ) $gf_id = 'HOM05D000950' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000950' ) $data_identifier = 'HOM05D000950' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 21, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 13, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 13, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428650' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1